Whole Brain: Saunders et al 2018 “DropViz”

Search the neuron dataset by Saunders et al: Neurotransmitter

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Cell-type
Anatomical region
Neurotransmitter
 

 

Heatmap units: mean log2(counts per 10,000 + 1)

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View mean expression per neurotransmitter

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Index Metacell ID Neurotransmitter Tissue Class marker Type marker Full name Common name
1 CB_1-1 glutamate Cerebellum Slc17a7 Gabra6 Neuron.Slc17a7.Gabra6 Granule cells
2 CB_2-1 GABA Cerebellum Gad1Gad2 Pcp2 Neuron.Gad1Gad2.Pcp2 Purkinje Neurons
3 CB_3-1 GABA Cerebellum Gad1Gad2 Pvalb-Nefh Neuron.Gad1Gad2.Pvalb-Nefh Cerebellum basket cells 1
4 CB_3-2 GABA Cerebellum Gad1Gad2 Pvalb-Rab3b Neuron.Gad1Gad2.Pvalb-Rab3b Cerebellum basket cells 2
5 CB_3-3 GABA Cerebellum Gad1Gad2 Pvalb-Cadm1 Neuron.Gad1Gad2.Pvalb-Cadm1 Cerebellum basket cells 3
6 CB_3-4 GABA Cerebellum Gad1Gad2 Pvalb – Chrm2 Neuron.Gad1Gad2.Pvalb-Chrm2 Cerebellum basket cells 4
7 CB_4-1 glutamate Cerebellum Slc17a6 Sln Neuron.Slc17a6.Sln Unipolar brush cell
8 CB_4-2 GABA Cerebellum Gad1Gad2 Lgi2 Neuron.Gad1Gad2.Lgi2 Golgi interneuron
9 CB_4-3 glutamate Cerebellum Slc17a6 Nrgn Neuron.Slc17a6.Nrgn Inferior colliculus
10 FC_1-1 GABA Frontal Cortex Gad1Gad2 Cplx3-Npy Neuron.Gad1Gad2.Cplx3 Neuron.Gad1Gad2.Cplx3
11 FC_1-10 GABA, glutamate Frontal Cortex Gad1Gad2-Slc17a8 Synpr-Sncg-Yjefn3 Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3
12 FC_1-11 GABA Frontal Cortex Gad1Gad2 Synpr-Sncg Neuron.Gad1Gad2.Synpr-Sncg Neuron.Gad1Gad2.Synpr-Sncg
13 FC_1-2 GABA Frontal Cortex Gad1Gad2 Cplx3-Reln Neuron.Gad1Gad2.Cplx3-Reln Neuron.Gad1Gad2.Cplx3-Reln
14 FC_1-3 GABA Frontal Cortex Gad1Gad2 Synpr-Nnat Neuron.Gad1Gad2.Synpr-Nnat Neuron.Gad1Gad2.Synpr-Nnat
15 FC_1-4 GABA Frontal Cortex Gad1Gad2 Synpr-Crispld2 Neuron.Gad1Gad2.Synpr-Crispld2 Neuron.Gad1Gad2.Synpr-Crispld2
16 FC_1-5 GABA, acetylcholine Frontal Cortex Gad1Gad2-Chat Synpr-Slc5a7 Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 Cholinergic cortical  interneurons
17 FC_1-6 GABA Frontal Cortex Gad1Gad2 Synpr-Pcdh11x Neuron.Gad1Gad2.Synpr-Pcdh11x Neuron.Gad1Gad2.Synpr-Pcdh11x
18 FC_1-7 GABA Frontal Cortex Gad1Gad2 Synpr-Dpy19l1 Neuron.Gad1Gad2.Synpr-Dpy19l1 Neuron.Gad1Gad2.Synpr-Dpy19l1
19 FC_1-8 GABA Frontal Cortex Gad1Gad2 Cplx3-Dpy19l1 Neuron.Gad1Gad2.Cplx3-Dpy19l1 Neuron.Gad1Gad2.Cplx3-Dpy19l1
20 FC_1-9 GABA Frontal Cortex Gad1Gad2 Cplx3-Crim1 Neuron.Gad1Gad2.Cplx3-Crim1 Neuron.Gad1Gad2.Cplx3-Crim1
21 FC_11-2 glutamate Frontal Cortex Slc17a6 Reln Neuron.Slc17a6.Reln Cajal-Retzius
22 FC_2-1 GABA Frontal Cortex Gad1Gad2 Sst-Chodl Neuron.Gad1Gad2.Sst-Chodl MGE-derived cortical interneurons–Long-range-projecting interneurons
23 FC_2-10 GABA, Th Frontal Cortex Gad1Gad2-Th Nr4a2 Neuron.Gad1Gad2-Th.Nr4a2 MGE-derived cortical interneurons
24 FC_2-2 GABA Frontal Cortex Gad1Gad2 Sst-Pdyn Neuron.Gad1Gad2.Sst-Pdyn MGE-derived cortical interneurons–Martinotti cells
25 FC_2-3 GABA Frontal Cortex Gad1Gad2 Sst-Calb2 Neuron.Gad1Gad2.Sst-Calb2 MGE-derived cortical interneurons–Martinotti cells
26 FC_2-4 GABA Frontal Cortex Gad1Gad2 Sst-Crh Neuron.Gad1Gad2.Sst-Crh MGE-derived cortical interneurons–Martinotti cells
27 FC_2-5 GABA Frontal Cortex Gad1Gad2 Sst-Nr2f2 Neuron.Gad1Gad2.Sst-Nr2f2 MGE-derived cortical interneurons–Martinotti cells
28 FC_2-6 GABA Frontal Cortex Gad1Gad2 Pvalb-Unc5b Neuron.Gad1Gad2.Pvalb-Unc5b MGE-derived cortical interneurons–Chandelier cells
29 FC_2-7 GABA Frontal Cortex Gad1Gad2 Pvalb Neuron.Gad1Gad2.Pvalb MGE-derived cortical interneurons–basket cells
30 FC_2-8 GABA Frontal Cortex Gad1Gad2 Pvalb-Nefm Neuron.Gad1Gad2.Pvalb-Nefm MGE-derived cortical interneurons–basket cells
31 FC_2-9 GABA Frontal Cortex Gad1Gad2 Pvalb-Necab1 Neuron.Gad1Gad2.Pvalb-Necab1 MGE-derived cortical interneurons–basket cells
32 FC_3-1 glutamate Frontal Cortex Slc17a7 Syt6-Sema5a Neuron.Slc17a7.Syt6-Sema5a Deep layer pyramidal cells
33 FC_3-10 glutamate Frontal Cortex Slc17a7-Slc17a8 Syt6-Cplx3 Neuron.Slc17a7-Slc17a8.Syt6-Cplx3 Deep layer pyramidal cells–Cortical Subplate
34 FC_3-11 glutamate Frontal Cortex Slc17a7 Syt6-Bdnf Neuron.Slc17a7.Syt6-Bdnf Deep layer pyramidal cells
35 FC_3-12 glutamate Frontal Cortex Slc17a7 Syt6-Kit Neuron.Slc17a7.Syt6-Kit Deep layer pyramidal cells
36 FC_3-13 glutamate Frontal Cortex Slc17a7 Syt6-Fos Neuron.Slc17a7.Syt6-Fos Deep layer pyramidal cells (IEG)
37 FC_3-2 glutamate Frontal Cortex Slc17a7 Syt6-Etv1 Neuron.Slc17a7.Syt6-Etv1 Deep layer pyramidal cells-Etv1 typically marks layer 5b, but some expression in layer 6, especially in medial regions like cingulate
38 FC_3-3 glutamate Frontal Cortex Slc17a7 Syt6-Efna5 Neuron.Slc17a7.Syt6-Efna5 Deep layer pyramidal cells
39 FC_3-4 glutamate Frontal Cortex Slc17a7 Syt6-Cyp26b1 Neuron.Slc17a7.Syt6-Cyp26b1 Deep layer pyramidal cells
40 FC_3-5 glutamate Frontal Cortex Slc17a7 Syt6-Slc30a3 Neuron.Slc17a7.Syt6-Slc30a3 Deep layer pyramidal cells
41 FC_3-6 glutamate Frontal Cortex Slc17a7 Syt6-Slc24a2 Neuron.Slc17a7.Syt6-Slc24a2 Deep layer pyramidal cells
42 FC_3-7 glutamate Frontal Cortex Slc17a7 Syt6-Lypd1 Neuron.Slc17a7.Syt6-Lypd1 Deep layer pyramidal cells–medial-lateral spatial gradient
43 FC_3-8 glutamate Frontal Cortex Slc17a7-Slc17a6 Syt6-Nnat NeuronSlc17a7-Slc17a6.Syt6-Nnat Deep layer pyramidal cells–medial cortex
44 FC_3-9 glutamate Frontal Cortex Slc17a7 Syt6-Sema3c Neuron.Slc17a7.Syt6-Sema3c Deep layer pyramidal cells
45 FC_4-1 glutamate Frontal Cortex Slc17a6-Slc17a7-Slc17a8 Fezf2.Slc17a8 Neuron.Slc17a6-Slc17a7-Slc17a8.Fezf2.Slc17a8 Deep layer pyramidal cells-Layer 5b
46 FC_4-2 glutamate Frontal Cortex Slc17a6-Slc17a7 Fezf2.3110035E14Rik Neuron.Slc17a6-Slc17a7.Fezf2.3110035E14Rik Deep layer pyramidal cells-Layer 5b
47 FC_5-1 glutamate Frontal Cortex Slc17a6-Slc17a7 Nr4a2 Neuron.Slc17a6-Slc17a7.Nr4a2 Claustrum
48 FC_6-1 glutamate Frontal Cortex Slc17a7 Nptxr-Calb1 Neuron.Slc17a7.Nptxr-Calb1 Superficial layer pyramidal cells–Layer 2/3
49 FC_6-2 glutamate Frontal Cortex Slc17a7 Nptxr-Ndst4 Neuron.Slc17a7.Nptxr-Ndst4 Superficial layer pyramidal cells–dorsal endopiriform nucleus or piriform cortex
50 FC_6-3 glutamate Frontal Cortex Slc17a7-Slc17a6 Nptxr-Rorb Neuron.Slc17a7-Slc17a6.Nptxr-Rorb Deep layer pyramidal cells–Layer 5a
51 FC_6-4 glutamate Frontal Cortex Slc17a7 Nptxr-Deptor Neuron.Slc17a7.Nptxr-Deptor Deep layer pyramidal cells–Layer 5a
52 FC_6-5 glutamate Frontal Cortex Slc17a7 Nptxr-Fos Neuron.Slc17a7.Nptxr-Fos Deep layer pyramidal cells (IEG)
53 FC_6-6 glutamate Frontal Cortex Slc17a7 Nptxr-Drd1 Neuron.Slc17a7.Nptxr-Drd1 Deep layer pyramidal cells
54 FC_7-1 glutamate Frontal Cortex Slc17a7 Parm1.Ndnf Neuron.Slc17a7.Parm1.Ndnf Deep layer pyramidal cells–layer 5
55 FC_7-2 glutamate Frontal Cortex Slc17a7 Parm1.Nnat Neuron.Slc17a7.Parm1.Nnat Deep layer pyramidal cells–layer 5
56 FC_7-3 glutamate Frontal Cortex Slc17a7 Parm1.Lsamp Neuron.Slc17a7.Parm1.Lsamp Deep layer pyramidal cells–layer 5
57 FC_7-4 glutamate Frontal Cortex Slc17a7 Parm1.Fos Neuron.Slc17a7.Parm1.Fos Deep layer pyramidal cells–layer 5 (IEG)
58 FC_7-5 glutamate Frontal Cortex Slc17a7 Parm1.Cadm2 Neuron.Slc17a7.Parm1.Cadm2 Deep layer pyramidal cells–layer 5
59 FC_7-6 glutamate Frontal Cortex Slc17a7 Parm1.Nefm Neuron.Slc17a7.Parm1.Nefm Deep layer pyramidal cells–layer 5
60 FC_7-7 glutamate Frontal Cortex Slc17a7 Parm1.Tshz2 Neuron.Slc17a7.Parm1.Tshz2 Deep layer pyramidal cells–layer 5
61 PC_1-1 glutamate Posterior Cortex Slc17a7 Syt6-Cplx3 Neuron.Slc17a7.Syt6-Cplx3 Cortical Subplate pyramidal cells
62 PC_1-2 glutamate Posterior Cortex Slc17a7-Slc17a8 Syt6-Lancl3 Neuron.Slc17a7-Slc17a8.Syt6-Lancl3 Cortical Subplate pyramidal cells
63 PC_1-3 glutamate Posterior Cortex Slc17a7 Syt6-Tshz2-Nrep Neuron.Slc17a7.Syt6-Tshz2-Nrep Subiculum and Entorhinal Cortex
64 PC_1-4 glutamate Posterior Cortex Slc17a7 Syt6-Sla Neuron.Slc17a7.Syt6-Sla Layer6a
65 PC_1-5 glutamate Posterior Cortex Slc17a7 Syt6-Nnat Neuron.Slc17a7.Syt6-Nnat Neuron.Slc17a7.Syt6-Nnat
66 PC_1-6 glutamate Posterior Cortex Slc17a7 Syt6-Slc24a2 Neuron.Slc17a7.Syt6-Slc24a2 Cadm2+, not selective
67 PC_1-7 glutamate Posterior Cortex Slc17a7 Syt6-Tox Neuron.Slc17a7.Syt6-Tox Neuron.Slc17a7.Syt6-Tox
68 PC_1-8 glutamate Posterior Cortex Slc17a7 Syt6-Nefm Neuron.Slc17a7.Syt6-Nefm Layer 6a
69 PC_1-9 glutamate Posterior Cortex Slc17a7 Syt6-Fos Neuron.Slc17a7.Syt6-Fos IEG+
70 PC_2-1 glutamate Posterior Cortex Slc17a7 Calb1-Ddit4l Neuron.Sc17a7.Calb1-Ddit4l Neurofilament, Layer4?
71 PC_2-10 glutamate Posterior Cortex Slc17a7-Slc17a6 Rorb-Pcdh20 Neuron.Slc17a7-Slc17a6.Rorb-Pcdh20 Layer 5a 
72 PC_2-11 glutamate Posterior Cortex Slc17a7 Rorb-Gpr83 Neuron.Sc17a7.Rorb-Gpr83 Layer 5a 
73 PC_2-12 glutamate Posterior Cortex Slc17a7 Fermt1 Neuron.Sc17a7.Fermt1 Subiculum/Parasubiculum
74 PC_2-13 glutamate Posterior Cortex Slc17a7-Slc17a6 Calb1-Rorb-Il1rapl2 Neuron.Slc17a7-Slc17a6.Calb1-Rorb-Il1rapl2 Layer 5b
75 PC_2-14 glutamate Posterior Cortex Slc17a7-Slc17a6 Tshz2 Neuron.Slc17a7-Slc17a6.Tshz2 Retrosplenial cortex (RSG)/Subiculum/Parasubiculum
76 PC_2-15 glutamate Posterior Cortex Slc17a7 Oprk1 Neuron.Sc17a7.Oprk1 Claustrum?
77 PC_2-16 glutamate Posterior Cortex Slc17a7 Crym Neuron.Sc17a7.Crym Subiculum
78 PC_2-17 glutamate Posterior Cortex Slc17a7 Sema3e-Nnat Neuron.Sc17a7.Sema3e-Nnat Layer 6
79 PC_2-18 glutamate Posterior Cortex Slc17a7 Sema3e-Onecut2 Neuron.Sc17a7.Sema3e-Onecut2 Layer 6
80 PC_2-2 glutamate Posterior Cortex Slc17a7 Calb1-Tshz2 Neuron.Sc17a7.Calb1-Tshz2 Retrosplenial cortex (RSG)/Entorhinal cortex, Layer 2/3
81 PC_2-3 glutamate Posterior Cortex Slc17a7 Tshz2-Smoc1 Neuron.Sc17a7.Tshz2-Smoc1 Agranular Retrosplenial cortex (RSG) (Smoc1+)
82 PC_2-4 glutamate Posterior Cortex Slc17a7 Calb1-Fos Neuron.Sc17a7.Calb1-Fos Layer 2/3, IEG+
83 PC_2-5 glutamate Posterior Cortex Slc17a7 Calb1-Lpl Neuron.Sc17a7.Calb1-Lpl Layer 2/3 
84 PC_2-6 glutamate Posterior Cortex Slc17a7 Calb1-Otof Neuron.Sc17a7.Calb1-Otof Layer 2/3
85 PC_2-7 glutamate Posterior Cortex Slc17a7 Calb1-Lpl-Penk Neuron.Sc17a7.Calb1-Lpl-Penk Layer 2/3
86 PC_2-8 glutamate Posterior Cortex Slc17a7 Calb1-Lpl-Cadm2 Neuron.Sc17a7.Calb1-Lpl-Cadm2 Layer 2/3, Cadm2+
87 PC_2-9 glutamate Posterior Cortex Slc17a7 Rorb-BC006965 Neuron.Sc17a7.Rorb-BC006965 Layer 5a, BC006965+
88 PC_3-1 glutamate Posterior Cortex Slc17a7 Bcl6-Cbln1 Neuron.Slc17a7.Bcl6-Cbln1 Layer 5a, entorhinal cortex , Cbln1+
89 PC_3-10 glutamate Posterior Cortex Slc17a7 Bcl6-Npnt Neuron.Slc17a7.Bcl6-Npnt Layer 5a
90 PC_3-2 glutamate Posterior Cortex Slc17a7 Bcl6-Dditl Neuron.Slc17a7.Bcl6-Dditl Layer 5a
91 PC_3-3 glutamate Posterior Cortex Slc17a7 Bcl6-C1ql2 Neuron.Slc17a7.Bcl6-C1ql2 Retrosplenial cortex (RSG), layer 5a
92 PC_3-4 glutamate Posterior Cortex Slc17a7 Bcl6-Tcerg1l Neuron.Slc17a7.Bcl6-Tcerg1l Layer 5a
93 PC_3-5 glutamate Posterior Cortex Slc17a7 Bcl6-Fos Neuron.Slc17a7.Bcl6-Fos Layer 5a, IEG+
94 PC_3-6 glutamate Posterior Cortex Slc17a7 Bcl6-Ndst4 Neuron.Slc17a7.Bcl6-Ndst4 Subiculum
95 PC_3-7 glutamate Posterior Cortex Slc17a7 Bcl6-Ptgfr Neuron.Slc17a7.Bcl6-Ptgfr Postsubiculum
96 PC_3-8 glutamate Posterior Cortex Slc17a7 Bcl6-Tshz2-Syt2 Neuron.Slc17a7.Bcl6-Tshz2-Syt2 Layer 5a, Entorhinal cortex, Tshz1+
97 PC_3-9 glutamate Posterior Cortex Slc17a7 Bcl6-Pvalb Neuron.Slc17a7.Bcl6-Pvalb Layer 5a
98 PC_4-1 GABA Posterior Cortex Gad1Gad2 Cplx3-Reln Neuron.Gad1Gad2.Cplx3-Reln Cortical subplate interneuron
99 PC_4-2 GABA Posterior Cortex Gad1Gad2 Cplx3-Npy Neuron.Gad1Gad2.Cplx3-Npy Cortical subplate interneuron
100 PC_4-3 GABA Posterior Cortex Gad1Gad2 Cplx3-Egln3 Neuron.Gad1Gad2.Cplx3-Egln3 Cortical subplate interneuron
101 PC_4-4 GABA, glutamate Posterior Cortex Gad1Gad2-Slc17a8 Synpr-Sncg-Yjefn3 Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3 Neuron.Gad1Gad2-Slc17a8.Synpr-Sncg-Yjefn3
102 PC_4-5 GABA Posterior Cortex Gad1Gad2 Synpr-Sncg Neuron.Gad1Gad2.Synpr-Sncg Neuron.Gad1Gad2.Synpr-Sncg
103 PC_4-6 GABA Posterior Cortex Gad1Gad2 Synpr-Nnat Neuron.Gad1Gad2.Synpr-Nnat Neuron.Gad1Gad2.Synpr-Nnat
104 PC_4-7 GABA Posterior Cortex Gad1Gad2 Synpr-Crispld2 Neuron.Gad1Gad2.Synpr-Crispld2 Neuron.Gad1Gad2.Synpr-Crispld2
105 PC_4-8 GABA, acetylcholine Posterior Cortex Gad1Gad2-Chat Synpr-Slc5a7 Neuron.Gad1Gad2-Chat.Synpr-Slc5a7 Neuron.Gad1Gad2-Chat.Synpr-Slc5a7
106 PC_4-9 GABA Posterior Cortex Gad1Gad2 Synpr-Pcdh11x Neuron.Gad1Gad2.Synpr-Pcdh11x Neuron.Gad1Gad2.Synpr-Pcdh11x
107 PC_5-1 GABA Posterior Cortex Gad1Gad2 Pvalb-Unc5b Neuron.Gad1Gad2.Pvalb-Unc5b Neuron.Gad1Gad2.Pvalb-Unc5b
108 PC_5-2 GABA Posterior Cortex Gad1Gad2 Pvalb-Nefm Neuron.Gad1Gad2.Pvalb-Nefm Neuron.Gad1Gad2.Pvalb-Nefm
109 PC_5-3 GABA Posterior Cortex Gad1Gad2 Pvalb-Cartpt Neuron.Gad1Gad2.Pvalb-Cartpt Neuron.Gad1Gad2.Pvalb-Cartpt
110 PC_5-4 GABA, Th Posterior Cortex Gad1Gad2-Th Nr4a2 Neuron.Gad1Gad2-Th.Nr4a2 Neuron.Gad1Gad2-Th.Nr4a2
111 PC_5-5 GABA Posterior Cortex Gad1Gad2 Sst-Crh Neuron.Gad1Gad2.Sst-Crh Neuron.Gad1Gad2.Sst-Crh
112 PC_5-6 GABA Posterior Cortex Gad1Gad2 Sst-Pdyn Neuron.Gad1Gad2.Sst-Pdyn Neuron.Gad1Gad2.Sst-Pdyn
113 PC_5-7 GABA Posterior Cortex Gad1Gad2 Sst-Nr2f2 Neuron.Gad1Gad2.Sst-Nr2f2 Neuron.Gad1Gad2.Sst-Nr2f2
114 PC_6-1 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Shisa8 Neuron.Slc17a7-Slc17a6.Shisa8 Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum)
115 PC_6-2 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Fos Neuron.Slc17a7-Slc17a6.Tshz2-Fos Layer 5, medial posterior cortex (Retrosplenial cortex (RSG), subiculum)
116 PC_6-3 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Rasd1 Neuron.Slc17a7-Slc17a6.Tshz2-Rasd1 Presubiculum, Col5a2+
117 PC_6-4 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Nnat Neuron.Slc17a7-Slc17a6.Tshz2-Nnat Presubiculum, Col5a2+
118 PC_6-5 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Cabp7 Neuron.Slc17a7-Slc17a6.Tshz2-Cabp7 Retrosplenial areas, subiculum, presubiculum, Cabp7+
119 PC_6-6 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Npnt Neuron.Slc17a7-Slc17a6.Tshz2-Npnt Retrosplenial areas, layer 5, Npnt+
120 PC_6-7 glutamate Posterior Cortex Slc17a7Slc17a6 Tshz2-Prlr Neuron.Slc17a7-Slc17a6.Tshz2-Prlr Entorhinal cortex?
121 PC_7-1 glutamate Posterior Cortex Slc17a7-Slc17a8 Fezf2-Slc17a8 Neuron.Slc17a7-Slc17a8.Fezf2-Slc17a8 Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+
122 PC_7-2 glutamate Posterior Cortex Slc17a7-Slc17a6 Fezf2-Htr2c Neuron.Slc17a7-Slc17a6.Fezf2-Htr2c Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+
123 PC_7-3 glutamate Posterior Cortex Slc17a7-Slc17a6 Fezf2-3110035E14Rik Neuron.Slc17a7-Slc17a6.Fezf2-3110035E14Rik Layer 5, Retrosplenial cortex (RSG) and Subiculum, Tshz2+
124 ENT_4-1 glutamate Entopeduncular nucleus & subthalamic nucleus Slc17a7 Zbtb20 Neuron.Slc17a7.Zbtb20 Ventral Hippocampus
125 ENT_4-10 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Pmch Neuron.Gad1Gad2.Pmch Lateral hypothalamus (LH)
126 ENT_4-11 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Otx2 Neuron.Gad1Gad2.Otx2 ventral lateral geniculate nucleus, magnocellular part (VLGMC)?
127 ENT_4-12 GABA, acetylcholine Entopeduncular nucleus & subthalamic nucleus Gad1Gad2-Chat Lhx8 Neuron.Gad1Gad2-Chat Nucleus basalis (NB) 
128 ENT_4-2 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Six3-Pvalb Neuron.Gad1Gad2.Six3-Pvalb Thalamic reticular nucleus, TRN+
129 ENT_4-3 GABA, glutamate Entopeduncular nucleus & subthalamic nucleus Gad1Gad2-Slc17a6 Cbln1 Neuron.Gad1Gad2-Slc17a6.Cbln1 Entopeduncular Nucleus (Ent), GABA/Glu co-releasing
130 ENT_4-4 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Dlk1 Neuron.Gad1Gad2.Dlk1 Zona Incerta, ventral part (ZIV) and/or Lateral hypothalamus (LH)
131 ENT_4-5 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Tcf7l2 Neuron.Gad1Gad2.Tcf7l2 Entopeduncular Nucleus (Ent)
132 ENT_4-6 glutamate Entopeduncular nucleus & subthalamic nucleus Slc17a6 Pitx2 Neuron.Slc17a6.Pitx2 Subthalamic Nucleus (STN), maybe ENT as well
133 ENT_4-7 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Pvalb_Gfra2 Neuron.Gad1Gad2.Pvalb-Gfra2 Zona Incerta, ventral part (ZIV)
134 ENT_4-8 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Pvalb_Ntng1 Neuron.Gad1Gad2.Pvalb-Ntng1 Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal?
135 ENT_4-9 GABA Entopeduncular nucleus & subthalamic nucleus Gad1Gad2 Pvalb-Spp1 Neuron.Gad1Gad2.Pvalb-Spp1 Entopeduncular Nucleus (Ent) or Zona Incerta, ventral part (ZIV). State signal?
136 GP_1-1 Acetylcholine, GABA, glutmate Globus pallidus externus & nucleus basalis Chat-Gad1Gad2-Slc17a8 Ngfr Neuron.Chat-Gad1Gad2-Slc17a8.Ngfr Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic
137 GP_1-2 Acetylcholine, GABA, glutmate Globus pallidus externus & nucleus basalis Chat-Gad1Gad2-Slc17a8 Nefm Neuron.Chat-Gad1Gad2-Slc17a8.Nefm Globus Pallidus/Nucleus Basalis (GP/NB), cholinergic
138 GP_2-1 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Tac1 Neuron.Gad1Gad2.Tac1 Substantia Innominata (SI)
139 GP_2-10 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Cadm2 Neuron.Gad1Gad2.Cadm2 Cadm2+ state
140 GP_2-11 glutamate Globus pallidus externus & nucleus basalis Slc17a7 Neurod2.Rorb Neuron.Slc17a7.Neurod2-Rorb Nucleus of the lateral olfactory tract (LOT) 
141 GP_2-12 glutamate Globus pallidus externus & nucleus basalis Slc17a7 Neurod2.C1ql3 Neuron.Slc17a7.Neurod2-C1ql3 Nucleus of the lateral olfactory tract (LOT) 
142 GP_2-13 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Grem Neuron.Gad1Gad2.Grem Globus Pallidus Externus (GP), Lhx6-enriched
143 GP_2-14 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Pvalb Neuron.Gad1Gad2.Scn4b Globus Pallidus Externus (GP), “Prototypical”
144 GP_2-15 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Fibcd1 Neuron.Gad1Gad2.Fibcd1 ventral GP (vGP)
145 GP_2-16 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Trdn Neuron.Gad1Gad2.Trdn Ventral Globus Pallidus Externus (vGP) / Ventral Pallidum (VP) / magnocellular preoptic nucleus (MCPO)
146 GP_2-17 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Elfn1-Grik3 Neuron.Gad1Gad2.Elfn1-Grik3 Globus Pallidus Externus (GP)
147 GP_2-18 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Pappa Neuron.Gad1Gad2.Pappa ventral GP (vGP)
148 GP_2-19 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Cyp26b1 Neuron.Gad1Gad2.Cyp26b1 Globus Pallidus Externus (GP), “Arkypallidal”
149 GP_2-2 glutamate Globus pallidus externus & nucleus basalis Slc17a6 Cck Neuron.Slc17a6.Cck Substantia Innominata (SI)
150 GP_2-20 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Six3-Pvalb Neuron.Gad1Gad2.Six3-Pvalb Thalamic reticular nucleus (TRN)
151 GP_2-21 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Vip Neuron.Gad1Gad2.Vip ventral GP (vGP)
152 GP_2-22 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Cplx3 Neuron.Gad1Gad2.Lamp5-Cplx3 Substantia Innominata (SI)
153 GP_2-23 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Trh Neuron.Gad1Gad2.Trh Substantia Innominata (SI)
154 GP_2-24 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Igfbp4.Rgs4 Neuron.Gad1Gad2.Igfbp4.Rgs4 Striatum, interneuron
155 GP_2-25 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Igfbp4.Adora1 Neuron.Gad1Gad2.Igfbp4.Adora1 Striatum, interneuron
156 GP_2-3 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Tac2 Neuron.Gad1Gad2.Tac2 Substantia Innominata (SI), dorsal, bordering GP
157 GP_2-4 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Hpcal4 Neuron.Gad1Gad2.Hpcal4 Substantia Innominata (SI)
158 GP_2-5 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Sst Neuron.Gad1Gad2.Sst Striatum, interneuron
159 GP_2-6 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Satb1 Neuron.Gad1Gad2.Satb1 Substantia Innominata (SI)
160 GP_2-7 GABA, glutamate Globus pallidus externus & nucleus basalis Gad1Gad2-Slc17a6 Cbln1 Neuron.Gad1Gad2-Slc17a6.Cbln1 Entopeduncular Nucleus (Ent), GABA/Glu co-releasing
161 GP_2-8 glutamate Globus pallidus externus & nucleus basalis Slc17a6 Tcf7l2 Neuron.Slc17a6.Tcf7l2 Substantia Innominata (SI)
162 GP_2-9 glutamate Globus pallidus externus & nucleus basalis Slc17a6 Rspo3 Neuron.Slc17a6.Rspo3 Substantia Innominata (SI)
163 GP_3-1 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Drd1-Nefm Neuron.Gad1Gad2.Drd1-Nefm Striatum, dSPNs, neurofilament state+
164 GP_3-10 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Vipr2 Neuron.Gad1Gad2.Vipr2 central amygdaloid nucleus, medial division, anterodorsal part (CeMAD)
165 GP_3-2 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Drd1-Pdyn Neuron.Gad1Gad2.Drd1-Pdyn Striatum, patch dSPNs
166 GP_3-3 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Adora2a Neuron.Gad1Gad2.Adora2a Striatum, iSPNs
167 GP_3-4 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Cadm2 Neuron.Gad1Gad2.Cadm2 Striatum, Cadm state SPNs
168 GP_3-5 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Drd1-Pde1c Neuron.Gad1Gad2.Drd1-Pde1c Striatum, dSPNs, Pde1c +
169 GP_3-6 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Adora2a-Pde1c Neuron.Gad1Gad2.Adora2a-Pde1c Striatum, iSPNs, Pde1c +
170 GP_3-7 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Sphkap-Tmem255a Neuron.Gad1Gad2.Sphkap-Tmem255a Basomedial amygdaloid nucleus (BMA)
171 GP_3-8 GABA Globus pallidus externus & nucleus basalis Gad1Gad2 Sphkap-Cpne4 Neuron.Gad1Gad2.Sphkap-Cpne4 Basomedial amygdaloid nucleus (BMA)
172 GP_3-9 GABA, Th Globus pallidus externus & nucleus basalis Gad1Gad2-Th Adora2a-Th Neuron.Gad1Gad2-Th.Adora2a-Th Striatum, Th+ SPN
173 HC_1-1 GABA (Pvalb) Hippocampus Gad1Gad2_Pvalb C1ql1 Neuron.Gad1Gad2_Pvalb.C1ql1 Interneuron, Chandelier
174 HC_1-10 GABA (Sst) Hippocampus Gad1Gad2_Sst Pcdh11x Neuron.Gad1Gad2_Sst.Pcdh11x Interneuron, OLM4 (Dentate enriched?)
175 HC_1-11 GABA (Cplx3) Hippocampus Gad1Gad2_Cplx3 Rxfp1 Gad1Gad2_Cplx3.Rxfp1 Interneuron, CA1 lacunosum moleculare1?
176 HC_1-12 GABA (Cplx3) Hippocampus Gad1Gad2_Cplx3 Tox Gad1Gad2_Cplx3.Tox Interneuron, lacunosum oriens1?
177 HC_1-13 GABA (Id2) Hippocampus Gad1Gad2_Id2 Tac1 Gad1Gad2_Id2.Tac1 Interneuron, Neurogliaform1
178 HC_1-14 GABA (Id2) Hippocampus Gad1Gad2_Id2 Bcl11b Gad1Gad2_Id2.Bcl11b Interneuron, Neurogliaform2
179 HC_1-15 GABA (Id2) Hippocampus Gad1Gad2_Id2 Prlr Gad1Gad2_Id2.Prlr Interneuron, Neurogliaform3
180 HC_1-16 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Nnat Gad1Gad2_Htr3a.Nnat Interneuron,  (candidate CGE-derived 1)
181 HC_1-17 GABA, acetylcholine Hippocampus Gad1Gad2Chat_Htr3a Chat Gad1Gad2Chat_Htr3a.Chat Interneuron, Cholinergic (candidate  CGE-derived 2)
182 HC_1-18 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Phlda1 Gad1Gad2_Htr3a.Phlda1 Interneuron,  (candidate CGE-derived 3)
183 HC_1-19 GABA, glutamate Hippocampus Gad1Gad2Slc17a8_Htr3a Efna5 Gad1Gad2_Htr3a.Efba5 Interneuron,  (candidate CGE-derived 4)
184 HC_1-2 GABA (Id2) Hippocampus Gad1Gad2_Id2 Sfrp2 Neuron.Gad1Gad2_Id2.Sfrp2 Interneuron, Neurogliaform1
185 HC_1-20 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Cpne5 Gad1Gad2_Htr3a.Cpne5 Interneuron,  (candidate CGE-derived 5)
186 HC_1-21 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Ecel1 Gad1Gad2_Htr3a.Ecel1 Interneuron,  (candidate CGE-derived 6)
187 HC_1-22 GABA, glutamate Hippocampus Gad1Gad2Slc17a8_Htr3a Ibsp Gad1Gad2_Htr3a.Ibsp Interneuron,  (candidate CGE-derived 7)
188 HC_1-23 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Krt73 Gad1Gad2_Htr3a.Krt73 Interneuron,  (candidate CGE-derived 8)
189 HC_1-24 GABA, glutamate Hippocampus Gad1Gad2Slc17a8_Htr3a Kctd12 Gad1Gad2Slc17a8_Htr3a.Ktcd12 Interneuron,  GABA/Glutamate co-releasing? (candidate CGE-derived 9)
190 HC_1-25 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Chrm2 Gad1Gad2_Htr3a.Chrm2 Interneuron,  (candidate CGE-derived 10)
191 HC_1-26 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Htr1b Gad1Gad2_Htr3a.Htr1b Interneuron,  (candidate CGE-derived 11)
192 HC_1-27 GABA (Htr3a) Hippocampus Gad1Gad2_Htr3a Sema3c Gad1Gad2_Htr3a.Sema3c Interneuron,  (candidate CGE-derived 12)
193 HC_1-3 GABA (Sst) Hippocampus Gad1Gad2_Sst Atp2b4 Neuron.Gad1Gad2_Sst.Atp2b4 Interneuron, Olm
194 HC_1-4 GABA, glutamate Hippocampus Gad1Gad2Slc17a8_Sst Slc17a8 Neuron.Gad1Gad2Slc17a8_Sst.Ncam2 Interneuron,  GABA/Glutamate co-releasing?
195 HC_1-5 GABA (Sst) Hippocampus Gad1Gad2_Sst Spon1 Neuron.Gad1Gad2_Sst.Spon1 Interneuron, OLM1
196 HC_1-6 GABA (Pvalb) Hippocampus Gad1Gad2_Pvalb Tac1 Neuron.Gad1Gad2_Pvalb.Tac1 Interneuron, Basket 1
197 HC_1-7 GABA (Pvalb) Hippocampus Gad1Gad2_Pvalb Gfra1 Neuron.Gad1Gad2_Pvalb.Gfra1 Interneuron, Basket 1
198 HC_1-8 GABA (Sst) Hippocampus Gad1Gad2_Sst Rbp4 Neuron.Gad1Gad2_Sst.Rbp4 Interneuron, OLM2 (CA1 enriched?)
199 HC_1-9 GABA (Sst) Hippocampus Gad1Gad2_Sst Grm1 Neuron.Gad1Gad2_Sst.Grm1 Interneuron, OLM3 (CA1 enriched?)
200 HC_13-1 neurogenesis Hippocampus Sox4 Efhd2 Neurogenesis.Sox4.Efhd2 Neurogenesis (SGZ)
201 HC_13-2 neurogenesis Hippocampus Sox4 Hist1h2al Neurogenesis.Sox4.Hist1h2al Neurogenesis (SGZ)
202 HC_13-3 neurogenesis Hippocampus Sox4 Cdc20 Neurogenesis.Sox4.Cdc20 Neurogenesis (SGZ)
203 HC_13-4 neurogenesis Hippocampus Sox4 Gad2 Neurogenesis.Sox4.Gad2 Neurogenesis (SGZ)
204 HC_13-5 neurogenesis Hippocampus Sox4 Gabra5 Neurogenesis.Sox4.Gabra5 Neurogenesis (SGZ)
205 HC_13-6 neurogenesis Hippocampus Sox4 Ppp2r2b Neurogenesis.Sox4.Ppp2r2b Neurogenesis (SGZ)
206 HC_14-1 glutamate Hippocampus Slc17a6 Lhx1 Neuron.Slc17a6.Lhx1 Cajal-retzius
207 HC_2-1 glutamate Hippocampus Slc17a7 Cbln4 Neuron.Slc17a7.Cbln4 Neuron.Slc17a7.Cbln4
208 HC_2-2 glutamate Hippocampus Slc17a6 Htr1a Neuron.Slc17a6.Htr1a Neuron.Slc17a6.Htr1a
209 HC_2-3 glutamate Hippocampus Slc17a6 Nts Neuron.Slc17a6.Nts Neuron.Slc17a6.Nts
210 HC_2-4 glutamate Hippocampus Slc17a6 Nnat Neuron.Slc17a6.Nnat Neuron.Slc17a6.Nnat
211 HC_2-5 glutamate Hippocampus Slc17a6 Nell1 Neuron.Slc17a6.Nell1 Neuron.Slc17a6.Nell1
212 HC_2-6 glutamate Hippocampus Slc17a6 Nefm Neuron.Slc17a6.Nefm Neuron.Slc17a6.Nefm
213 HC_2-7 glutamate Hippocampus Slc17a6 Grp Neuron.Slc17a6.Grp Neuron.Slc17a6.Grp
214 HC_3-1 glutamate Hippocampus Slc17a7-Slc17a6 Nxph3-Nts Neuron.Slc17a7-Slc17a6.Nxph3-Nts Subiculum
215 HC_3-10 glutamate Hippocampus Slc17a7 Nxph3-Sema3c Neuron.Slc17a7.Nxph3-Sema3c Entorhinal cortex
216 HC_3-11 glutamate Hippocampus Slc17a7 Nxph3-Ajap1 Neuron.Slc17a7.Nxph3-Ajap1 Entorhinal cortex
217 HC_3-2 glutamate Hippocampus Slc17a7-Slc17a6 Nxph3-Cbln2-Htr2c Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Htr2c Deep layer subiculum
218 HC_3-3 glutamate Hippocampus Slc17a7-Slc17a6 Nxph3-Cbln2-Kcnh8 Neuron.Slc17a7-Slc17a6.Nxph3-Cbln2-Kcnh8 Deep layer subiculum
219 HC_3-4 glutamate Hippocampus Slc17a7 Nxph3-Hpcal1-Tpbg Neuron.Slc17a7.Nxph3-Hpcal1-Tpbg Entorhinal cortex
220 HC_3-5 glutamate Hippocampus Slc17a7 Nxph3-Hpcal1-Fos Neuron.Slc17a7.Nxph3-Hpcal1-Fos Entorhinal cortex (IEG)
221 HC_3-6 glutamate Hippocampus Slc17a7 Nxph3-Hpcal-Igfbp4 Neuron.Slc17a7.Nxph3-Hpcal-Igfbp4 Entorhinal cortex
222 HC_3-7 glutamate Hippocampus Slc17a7 Nxph3-Hpcal-Krt12 Neuron.Slc17a7.Nxph3-Hpcal-Krt12 Entorhinal cortex
223 HC_3-8 glutamate Hippocampus Slc17a7 Nxph3-Cplx3-Hs6st2 Neuron.Slc17a7.Nxph3-Cplx3-Hs6st2 Entorhinal cortex
224 HC_3-9 glutamate Hippocampus Slc17a7 Nxph3-Cplx3-Pappa2 Neuron.Slc17a7.Nxph3-Cplx3-Pappa2 Entorhinal cortex
225 HC_4-1 glutamate Hippocampus Slc17a7 C1ql2-Cck Neuron.Slc17a7.C1ql2-Cck Dentate Principal cells
226 HC_4-2 glutamate Hippocampus Slc17a7 C1ql2-Penk Neuron.Slc17a7.C1ql2-Penk Dentate Principal cells
227 HC_5-1 glutamate Hippocampus Slc17a7 Fibcd1-Lypd1 Neuron.Slc17a7.Fibcd1-Lypd1 CA1 Principal cells (Anterior)
228 HC_5-10 glutamate Hippocampus Slc17a7 Cbln1-Reln Neuron.Slc17a7.Reln Medial entorrhinal cortexm, Reln+/Cbln1+
229 HC_5-11 glutamate Hippocampus Slc17a7 Cbln1-Gpr88 Neuron.Slc17a7.Cbln1-Gpr88 Medial entorrhinal cortex
230 HC_5-12 glutamate Hippocampus Slc17a7 Cbln1-Trps1 Neuron.Slc17a7.Cbln1-Trps1 Medial entorrhinal cortex, Cbln1+/Trps1+
231 HC_5-13 glutamate Hippocampus Slc17a7 Ptgfr Neuron.Slc17a7.Ptgfr Postsubiculum
232 HC_5-14 glutamate Hippocampus Slc17a7 Fezf2 Neuron.Slc17a7.Fezf2-Efna5 Subiculum
233 HC_5-15 glutamate Hippocampus Slc17a7 Fezf2-Rxfp1 Neuron.Slc17a7.Fezf2-Rxfp1 Subiculum
234 HC_5-2 glutamate Hippocampus Slc17a7 Fibcd1-Nrip3 Neuron.Slc17a7.Fibcd1-Nrip3 CA1 Principal cells
235 HC_5-3 glutamate Hippocampus Slc17a7 Fibcd1-Nptx2 Neuron.Slc17a7.Fibcd1-Nptx2 CA1 Principal cells
236 HC_5-4 glutamate Hippocampus Slc17a7 Fibcd1-Kitl Neuron.Slc17a7.Fibcd1-Kitl CA1 Principal cells
237 HC_5-5 glutamate Hippocampus Slc17a7 Fibcd1-Grm5 Neuron.Slc17a7.Fibcd1-Grm5 CA1 Principal cells
238 HC_5-6 glutamate Hippocampus Slc17a7 Dcn-Pou3f1 Neuron.Slc17a7.Dcn-Pou3f1 Anterior Subiculum, proximal to CA1
239 HC_5-7 glutamate Hippocampus Slc17a7 Fibcd1-Inhba Neuron.Slc17a7.FIbcd1-Inhba CA1 Principal cells
240 HC_5-8 glutamate Hippocampus Slc17a7 Fibcd1-Fos Neuron.Slc17a7.Fibcd1-Fos CA1 Principal cells
241 HC_5-9 glutamate Hippocampus Slc17a7 Dcn-Camk2d Neuron.Slc17a7.Dcn-Camk2d CA1 Principal cells
242 HC_6-1 glutamate Hippocampus Slc17a7 Pvrl3-Nos1 Neuron.Slc17a7.Pvrl3-Nos1 CA3 Principal cells
243 HC_6-2 glutamate Hippocampus Slc17a7 Pvrl3-Grm5 Neuron.Slc17a7.Pvrl3-Grm5 CA3 Principal cells
244 HC_6-3 glutamate Hippocampus Slc17a7 Pvrl3-St18 Neuron.Slc17a7.Pvrl3-St18 Lateral CA3 Principal cells
245 HC_6-4 glutamate Hippocampus Slc17a7 Rgs14 Neuron.Slc17a7.Rgs14 CA2 Principal cells
246 HC_6-5 glutamate Hippocampus Slc17a7 Calb2-Vgll3 Neuron.Slc17a7.Calb2-Vgll3 Dentate hilum?
247 HC_6-6 glutamate Hippocampus Slc17a7 Calb2-Adcyap1 Neuron.Slc17a7.Calb2-Adcyap1 Dentate hilum?
248 HC_6-7 glutamate Hippocampus Slc17a7 Pvrl3-Inhba Neuron.Slc17a7.Pvrl3-Inhba CA3 Principal cells
249 HC_6-8 glutamate Hippocampus Slc17a7 Pvrl3-Fos Neuron.Slc17a7.Pvrl3-Fos CA3 Principal cells
250 STR_10-1 GABA Striatum Gad1Gad2 Drd1-Fos Neuron.Gad1Gad2.Drd1-Fos dSPN, IEG+
251 STR_10-2 GABA Striatum Gad1Gad2 Drd1-Lypd1 Neuron.Gad1Gad2.Drd1-Lypd1 dSPN, patch
252 STR_10-3 GABA Striatum Gad1Gad2 Drd1-Pde1a Neuron.Gad1Gad2.Drd1-Pde1a dSPN
253 STR_10-4 GABA Striatum Gad1Gad2 Drd1-Nefm Neuron.Gad1Gad2.Drd1-Nefm dSPN
254 STR_10-5 GABA Striatum Gad1Gad2 Drd1-Cxcl14 Neuron.Gad1Gad2.Drd1-Cxcl14 dSPN, lateral striatum
255 STR_11-1 GABA Striatum Gad1Gad2 Adora2a-Nefm Neuron.Gad1Gad2.Adora2a-Nefm iSPN
256 STR_11-2 GABA Striatum Gad1Gad2 Adora2a-Nnat Neuron.Gad1Gad2.Adora2a-Nnat iSPN
257 STR_11-3 GABA Striatum Gad1Gad2 Adora2a-Fos Neuron.Gad1Gad2.Adora2a-Fos iSPN, IEG+
258 STR_12-1 GABA, acetylcholine, glutamate Striatum Gad1Gad2-Chat-Slc17a8 Chat Neuron.Gad1Gad2-Chat-Slc17a8.Chat cholinergic interneuron
259 STR_13-1 GABA Striatum Gad1Gad2 Drd1-Tpbg Neuron.Gad1Gad2.Drd1-Tpbg eccentric SPN, dSPN-like markers
260 STR_13-10 GABA Striatum Gad1Gad2 Drd1-Nfib Neuron.Gad1Gad2.Drd1-Nfib Amygdala
261 STR_13-11 GABA Striatum Gad1Gad2 Sgol2a Neuron.Gad1Gad2.Sgol2a Very small cluster
262 STR_13-2 GABA Striatum Gad1Gad2 Drd1-Otof Neuron.Gad1Gad2.Drd1-Otof-Sorcs1 eccentric SPN, dSPN-like markers
263 STR_13-3 GABA Striatum Gad1Gad2 Drd1-Otof Neuron.Gad1Gad2.Drd1-Otof-Lmo2 eccentric SPN, dSPN-like markers
264 STR_13-4 GABA Striatum Gad1Gad2 Adora2a-Otof Neuron.Gad1Gad2.Adora2a-Otof eccentric SPN, iSPN-like markers
265 STR_13-5 GABA Striatum Gad1Gad2 Adora2a-Th Neuron.Gad1Gad2.Adora2a-Th eccentric SPN, iSPN-like markers, Th+
266 STR_13-6 glutamate Striatum Slc17a6 Oprk1 Neuron.Slc17a6.Oprk1 Claustrum cortex
267 STR_13-7 glutamate Striatum Slc17a7 Cplx3 Neuron.Slc17a7.Cplx3 Cortical subplate
268 STR_13-8 glutamate Striatum Slc17a7 Dkk3 Neuron.Slc17a7.Dkk3 Deep layer cortex
269 STR_13-9 GABA Striatum Gad1Gad2 Resp18 Neuron.Gad1Gad2.Resp18 Bed nucleus of the stria terminalis (BNST)
270 STR_14-1 GABA Striatum Gad1Gad2 Pvalb-Megf11 Neuron.Gad1Gad2_Pvalb.Pvalb-Megf11 Fast-spiking interneuron, Pvalb+
271 STR_14-2 GABA Striatum Gad1Gad2 Pnoc Neuron.Gad1Gad2.Pnoc Fast-spiking interneuron, Pvalb+/Pnoc+
272 STR_14-3 GABA Striatum Gad1Gad2 Pvalb-Rgs12 Neuron.Gad1Gad2.Pvalb-Rgs12 Fast-spiking interneuron, Pvalb+/Rgs12+
273 STR_14-4 GABA, Th Striatum Gad1Gad2-Th Trh Neuron.Gad1Gad2-Th.Trh Th+ interneuron
274 STR_15-1 GABA Striatum Gad1Gad2 Chodl Neuron.Gad1Gad2.Chodl Low-threshold spiking interneuron, Npy+/Sst+
275 STR_2-1 neurogenesis Striatum Sox4 Ung Neurogenesis.Sox4.Ung RostralÊmigratory streamÊ(RMS)
276 STR_2-2 neurogenesis Striatum Sox4 Stmn2 Neurogenesis.Sox4.Stmn2 RostralÊmigratory streamÊ(RMS)
277 STR_2-3 neurogenesis Striatum Sox4 Tuba1c Neurogenesis.Sox4.Tuba1c RostralÊmigratory streamÊ(RMS)
278 STR_2-4 neurogenesis Striatum Sox4 Stmn2-Csrp2 Neurogenesis.Sox4.Stmn2-Csrp2 RostralÊmigratory streamÊ(RMS)
279 STR_2-5 neurogenesis Striatum Sox4 Hist1h2al Neurogenesis.Sox4.Hist1h2al RostralÊmigratory streamÊ(RMS)
280 STR_2-6 neurogenesis Striatum Sox4 Notum Neurogenesis.Sox4.Notum RostralÊmigratory streamÊ(RMS)
281 SN_1-1 glutamate Substantia nigra & Ventral tegmental area Slc17a7 C1ql3 Neuron.Slc17a7.C1ql3 Hippocampus Excitatory Neuron
282 SN_2-1 glutamate Substantia nigra & Ventral tegmental area Slc17a6 NA Neuron.Slc17a6 Thalamus, glutamatergic
283 SN_3-1 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Nfib-Satb1 Neuron.Gad1Gad2.Nfib-Satb1 Supramammillary Nucleus (SuM)
284 SN_3-10 glutamate Substantia nigra & Ventral tegmental area Slc17a6 Cacna2d1 Neuron.Slc17a6.Cacna2d1 generic SN/VTA glutamatergic neuron
285 SN_3-11 glutamate Substantia nigra & Ventral tegmental area Slc17a6 Shox2 Neuron.Slc17a6.Shox2 peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL)
286 SN_3-12 glutamate Substantia nigra & Ventral tegmental area Slc17a6 Nkx6-1 Neuron.Slc17a6.Nkx6-1 SN/VTA (SNr)
287 SN_3-13 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Sema3e Neuron.Gad1Gad2.Sema3e SN/VTA (SNr)
288 SN_3-14 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Ttn Neuron.Gad1Gad2.Ttn red nucleus, magnocellular/parvicellular (RMC/RPC)
289 SN_3-15 glutamate Substantia nigra & Ventral tegmental area Slc17a6 C1ql2 Neuron.Slc17a6.C1ql2 red nucleus, magnocellular/parvicellular (RMC/RPC)
290 SN_3-16 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Gad2-Kcnc3 Neuron.Gad1Gad2.Gad2-Kcnc3 GABAergic, K/Na Channel State
291 SN_3-17 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Sema3e-Kcng4 Neuron.Gad1Gad2.Sema3e-Kcng4 GABAergic, K Channel State, Sema3e+ SN/VTA (SNr)
292 SN_3-18 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Pax5 Neuron.Gad1Gad2.Pax5 SN/VTA (SNr)
293 SN_3-19 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Tmem132c Neuron.Gad1Gad2.Tmem132c SN/VTA (SNr)
294 SN_3-2 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Otx2-Chrna3 Neuron.Gad1Gad2.Otx2-Chrna3 SN/VTA (dorsal SNr)
295 SN_3-3 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Gad2 Neuron.Gad1Gad2.Gad2 generic SN/VTA GABAergic neuron
296 SN_3-4 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Ndnf Neuron.Gad1Gad2.Ndnf medial geniculate nucleus, ventral part (MGV)? Or State? 
297 SN_3-5 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Rln3 Neuron.Gad1Gad2.Rln3 parabrachial pigmented nucleus (PBP)
298 SN_3-6 glutamate Substantia nigra & Ventral tegmental area Slc17a6 Tcf4 Neuron.Slc17a6.Tcf4 Supramammillary Nucleus (SuM)
299 SN_3-7 glutamate, GABA, Th Substantia nigra & Ventral tegmental area Slc17a6-Gad2-Th Crhbp Neuron.Slc17a6-Gad2-Th.Crhbp  Supramammillary Nucleus (SuM) Dopaminergic?, Th+/Ddc+
300 SN_3-8 GABA Substantia nigra & Ventral tegmental area Gad1Gad2 Fos Neuron.Gad1Gad2.Gad2-Fos IEG state, GABAergic 
301 SN_3-9 glutamate Substantia nigra & Ventral tegmental area Slc17a6 Nts Neuron.Slc17a6.Nts peripeduncular nucleus & posterior intralaminar thalamic nucleus (PP & PIL)
302 SN_4-1 Dopamine, glutamate Substantia nigra & Ventral tegmental area Th-Slc17a6 Lpl Neuron.Th-Slc17a6-Lpl VTA (ventral VTA)
303 SN_4-2 Dopamine Substantia nigra & Ventral tegmental area Th Cbln1 Neuron.Th.Cbln1 VTA (dorsal VTA)
304 SN_4-3 Dopamine Substantia nigra & Ventral tegmental area Th Cyp26b1 Neuron.Th.Cyp26b1 SNc/VTA
305 SN_4-4 Dopamine Substantia nigra & Ventral tegmental area Th C1ql3 Neuron.Th.C1ql3 VTA (dorsal VTA)
306 SN_4-5 Dopamine Substantia nigra & Ventral tegmental area Th Vcan Neuron.Th.Vcan SNc
307 SN_4-6 Dopamine Substantia nigra & Ventral tegmental area Th Cadm2 Neuron.Th.Cadm2 Cadm2 state
308 SN_4-7 Dopamine Substantia nigra & Ventral tegmental area Th Nefm Neuron.Th.Nefl Neurofilament state
309 SN_4-8 Dopamine Substantia nigra & Ventral tegmental area Th Anxa1 Neuron.Th.Aldh1a1 SNc/VTA
310 SN_4-9 Dopamine Substantia nigra & Ventral tegmental area Th Grin2c Neuron.Th.Grin2c SNc
311 TH_1-1 glutamate Thalamus Slc17a7 Tac2.Chat Neuron.Slc17a7.Tac2.Chat Habenular cholinergic cells
312 TH_1-2 glutamate Thalamus Slc17a7 Tac2.Syt15 Neuron.Slc17a7.Tac2.Syt15 Medial habenula
313 TH_1-3 glutamate Thalamus Slc17a7 Tac2.Wif1 Neuron.Slc17a7.Tac2.Wif1 Medial habenular, lateral portion
314 TH_1-4 glutamate Thalamus Slc17a7 Tac2.Htr2c Neuron.Slc17a7.Tac2.Htr2c Lateral habenula
315 TH_2-1 glutamate Thalamus Slc17a6 Rora.Atp2b4 Neuron.Slc17a6.Rora.Atp2b4 Lateral Geniculate Nucleus (LGN)
316 TH_2-10 glutamate Thalamus Slc17a6 Rora.Cacng4 Neuron.Slc17a6.Rora.Cacng4 Non-anterior nuclei
317 TH_2-11 glutamate Thalamus Slc17a6 Rora.Pvalb Neuron.Slc17a6.Rora.Pvalb Non-anterior nuclei
318 TH_2-2 glutamate Thalamus Slc17a6 Rora.Nptxr Neuron.Slc17a6.Rora.Nptxr Reuniens thalamic nucleus?
319 TH_2-3 glutamate Thalamus Slc17a6 Rora.Calca Neuron.Slc17a6.Rora.Calca Parafasicular nucleus (PF)
320 TH_2-4 glutamate Thalamus Slc17a6 Rora.Nrp2 Neuron.Slc17a6.Rora.Nrp2 Anterior thalamus
321 TH_2-5 glutamate Thalamus Slc17a6 Rora.C1ql2 Neuron.Slc17a6.Rora.C1ql2 Anterodorsal thalamic nucleus
322 TH_2-6 glutamate Thalamus Slc17a6 Rora.Fgf10 Neuron.Slc17a6.Rora.Fgf10 Lateral dorsal thalamic nuclei (LD)
323 TH_2-7 glutamate Thalamus Slc17a6 Rora.Lypd6 Neuron.Slc17a6.Rora.Lypd6 Parafasicular nucleus (PF)
324 TH_2-8 glutamate Thalamus Slc17a6 Rora.Cbln2 Neuron.Slc17a6.Rora.Cbln2 Neuron.Slc17a6.Rora.Cbln2
325 TH_2-9 glutamate Thalamus Slc17a6 Rora.Lrrtm2 Neuron.Slc17a6.Rora.Lrrtm2 Cadm2 state
326 TH_3-1 GABA Thalamus Gad1Gad2 Six3-Adcy1 Neuron.Gad1Gad2.Six3-Adcy1 Reticular formation
327 TH_3-10 glutamate Thalamus Slc17a6 Ebf1 Neuron.Slc17a6.Ebf1 Anterior pretectal nucleus (APT)
328 TH_3-11 GABA Thalamus Gad1Gad2 Ttn Neuron.Gad1Gad2.Ttn Neuron.Gad1Gad2.Ttn
329 TH_3-2 GABA Thalamus Gad1Gad2 Six3-Sst Neuron.Gad1Gad2.Six3-Sst Reticular formation
330 TH_3-3 GABA Thalamus Gad1Gad2 Pou6f2-Pax6 Neuron.Gad1Gad2.Pou6f2-Pax6 Zona incerta (ZI)
331 TH_3-4 glutamate Thalamus Slc17a6 Pitx2 Neuron.Slc17a6.Pitx2 Subthalamic nucleus (STN)
332 TH_3-5 GABA Thalamus Gad1Gad2 Chrnb3 Neuron.Gad1Gad2.Chrnb3 interneuron, Lateral Geniculate Nucleus  (LGN)
333 TH_3-6 GABA Thalamus Gad1Gad2 Gata3 Neuron.Gad1Gad2.Gata3 Periacqueductal gray (PAG) (or adjacent APTD)
334 TH_3-7 glutamate, GABA Thalamus Slc17a6-Gad1Gad2 Asb4 Neuron.Slc17a6-Gad1Gad2.Asb4 Periventricular Fiber System (Pv)
335 TH_3-8 GABA Thalamus Gad1Gad2 Col25a1 Neuron.Gad1Gad2.Col25a1 Neuron.Gad1Gad2.Col25a1
336 TH_3-9 glutamate Thalamus Slc17a6 Nrgn Neuron.Slc17a6.Nrgn Habenula (inferomedial and lateral)